Publications

Xin Tong, Yide Zhang, Lihong V. Wang (2024). Enhancing optical microscopy with quantum entanglement. Optics and Photonics News, vol. 35, no. 11, pp. 32-39.

PDF DOI

Kang Yong Loh, Lei S. Li, Jingyue Fan, Yi Yiing Goh, Weng Heng Liew, Samuel Davis, Yide Zhang, Kai Li, Jie Liu, Liangliang Liang, Minjun Feng, Ming Yang, Hang Zhang, Ping'an Ma, Guangxue Feng, Zhao Mu, Weibo Gao, Tze Chien Sum, Bin Liu, Jun Lin, Kui Yao, Lihong V. Wang, Xiaogang Liu (2024). Sharp-peaked lanthanide nanocrystals for near-infrared photoacoustic multiplexed differential imaging. Communications Materials, vol. 5, no. 164, pp. 1-10.

PDF DOI

Yide Zhang, Peng Hu, Lei Li, Rui Cao, Anjul Khadria, Konstantin Maslov, Xin Tong, Yushun Zeng, Laiming Jiang, Qifa Zhou, Lihong V. Wang (2024). Ultrafast single-shot 3D photoacoustic tomography in vivo using a single-element detector. SPIE Photonics West 2024, San Francisco, California USA.

PDF DOI Seno Medical Best Paper Award

Yide Zhang, Zhe He, Xin Tong, David C. Garrett, Rui Cao, Lihong V. Wang (2024). Quantum imaging of biological organisms through spatial and polarization entanglement. Science Advances, vol. 10, no. 10, pp. eadk1495.

PDF DOI Featured News

Ruofan Cao, Yide Zhang, Jessica Houston (2024). Editorial: Phasor analysis for fluorescence lifetime data. Frontiers in Bioinformatics (Editorial), vol. 4, no. 1375480, pp. 1-2.

PDF DOI

Yide Zhang, Peng Hu, Lei Li, Rui Cao, Anjul Khadria, Konstantin Maslov, Xin Tong, Yushun Zeng, Laiming Jiang, Qifa Zhou, Lihong V. Wang (2023). Ultrafast longitudinal imaging of haemodynamics via single-shot volumetric photoacoustic tomography with a single-element detector. Nature Biomedical Engineering, vol. 8, no. 6, pp. 712-725.

PDF Video DOI Nature Outlook: Medical Diagnostics Nature Biomedical Engineering’s News & Views Featured News NIH NIBIB’s Science Highlights

Yide Zhang (2023). Deep learning-enhanced microscopy with extended depth-of-field. Light: Science & Applications (News & Views), vol. 12, no. 284, pp. 1-3.

PDF DOI

Zhe He, Yide Zhang, Xin Tong, Lei Li, Lihong V. Wang (2023). Quantum microscopy of cells at the Heisenberg limit. Nature Communications, vol. 14, no. 2441, pp. 1-8.

PDF DOI Caltech’s 2023 Year in Review Featured News

Xin Tong, Zhe He, Yide Zhang, Samuel Solomon, Li Lin, Qiyuan Song, Lihong V. Wang (2023). Experimental full-domain mapping of quantum correlation in Clauser-Horne-Shimony-Holt scenarios. Physical Review Applied, vol. 19, no. 034049, pp. 1-16.

PDF DOI

Yogeshwar Nath Mishra, Peng Wang, Florian J. Bauer, Yide Zhang, Dag Hanstorp, Stefan Will, Lihong V. Wang (2023). Single-pulse real-time billion-frames-per-second planar imaging of ultrafast nanoparticle-laser dynamics and temperature in flames. Light: Science & Applications, vol. 12, no. 47, pp. 1-12.

PDF DOI Light: Science & Applications Top Downloads Featured News

Yide Zhang, Binglin Shen, Tong Wu, Jerry Zhao, Joseph C. Jing, Peng Wang, Kanomi Sasaki-Capela, William G. Dunphy, David Garrett, Konstantin Maslov, Weiwei Wang, Lihong V. Wang (2023). Ultrafast phase imaging of propagating current flows in myelinated axons and electromagnetic pulses in dielectrics. SPIE Photonics West 2023, San Francisco, California USA.

PDF DOI Hitachi High-Tech Best Presentation Award

Zhongtao Cheng, Chengmingyue Li, Anjul Khadria, Yide Zhang, Lihong V. Wang (2023). High-gain and high-speed wavefront shaping through scattering media. Nature Photonics, vol. 17, no. 2, pp. 1-9.

PDF DOI Featured News

Li Lin, Xin Tong, Susana Cavallero, Yide Zhang, Shuai Na, Rui Cao, Tzung K Hsiai, Lihong V. Wang (2023). Non-invasive photoacoustic computed tomography of rat heart anatomy and function. Light: Science & Applications, vol. 12, no. 12, pp. 1-9.

PDF DOI

Rui Cao, Jingjing Zhao, Lei Li, Lin Du, Yide Zhang, Yilin Luo, Laiming Jiang, Samuel Davis, Qifa Zhou, Adam de la Zerda, Lihong V. Wang (2022). Optical-resolution photoacoustic microscopy with a needle-shaped beam. Nature Photonics, vol. 17, no. 1, pp. 89-95.

PDF DOI Nature Research Highlight Featured News

Rui Cao, Scott D. Nelson, Samuel Davis, Yu Liang, Yilin Luo, Yide Zhang, Brooke Crawford, Lihong V. Wang (2022). Label-free intraoperative histology of bone tissue via deep-learning-assisted ultraviolet photoacoustic microscopy. Nature Biomedical Engineering, vol. 6, no. 9, pp. 1-11.

PDF DOI Featured News

Yide Zhang, Binglin Shen, Tong Wu, Jerry Zhao, Joseph C. Jing, Peng Wang, Kanomi Sasaki-Capela, William G. Dunphy, David Garrett, Konstantin Maslov, Weiwei Wang, Lihong V. Wang (2022). Ultrafast and hypersensitive phase imaging of propagating internodal current flows in myelinated axons and electromagnetic pulses in dielectrics. Nature Communications, vol. 13, no. 5247, pp. 1-12.

PDF DOI Featured News

Varun Mannam, Yide Zhang, Yinhao Zhu, Evan Nichols, Qingfei Wang, Vignesh Sundaresan, Siyuan Zhang, Cody Smith, Paul W. Bohn, Scott S. Howard (2022). Real-time image denoising of mixed Poisson–Gaussian noise in fluorescence microscopy images using ImageJ. Optica, vol. 9, no. 4, pp. 335-345.

PDF DOI

Yide Zhang, Ian H. Guldner, Evan L. Nichols, David Benirschke, Cody J. Smith, Siyuan Zhang, Scott S. Howard (2021). Instant FLIM enables 4D in vivo lifetime imaging of intact and injured zebrafish and mouse brains. Optica, vol. 8, no. 6, pp. 885-897.

PDF DOI Optica Top Downloads Control Software Analysis Software

Lei Li, Yang Li, Yide Zhang, Lihong V. Wang (2021). Snapshot photoacoustic topography through an ergodic relay of optical absorption in vivo. Nature Protocols, vol. 16, no. 5, pp. 2381-2394.

PDF DOI Nature Protocols’ Featured Protocol of the Week

Varun Mannam, Yide Zhang, Xiaotong Yuan, Cara Ravasio, Scott S. Howard (2020). Machine learning for faster and smarter fluorescence lifetime imaging microscopy. Journal of Physics: Photonics, vol. 2, no. 4, pp. 042005.

PDF DOI

Yide Zhang, Sergei Rouvimov, Xiaotong Yuan, Karla Gonzalez-Serrano, Alan C. Seabaugh, Scott S. Howard (2020). Resolution enhancement of transmission electron microscopy by super-resolution radial fluctuations. Applied Physics Letters, vol. 116, no. 4, pp. 044105.

PDF DOI

Gang Bao, Yide Zhang, Zhigang Zeng (2020). Memory analysis for memristors and memristive recurrent neural networks. IEEE/CAA Journal of Automatica Sinica, vol. 7, no. 1, pp. 96-105.

PDF DOI

Yide Zhang, Takashi Hato, Pierre C. Dagher, Evan L. Nichols, Cody J. Smith, Kenneth W. Dunn, Scott S. Howard (2019). Automatic segmentation of intravital fluorescence microscopy images by K-means clustering of FLIM phasors. Optics Letters, vol. 44, no. 16, pp. 3928-3931.

PDF Code DOI Optics Letters’ Featured Paper of Volume 44, Issue 16

Yide Zhang, Yinhao Zhu, Evan Nichols, Qingfei Wang, Siyuan Zhang, Cody Smith, Scott Howard (2019). A Poisson-Gaussian denoising dataset with real fluorescence microscopy images. IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR 2019), Long Beach, California USA.

PDF Code Dataset DOI

Yide Zhang, Evan L. Nichols, Abigail M. Zellmer, Ian H. Guldner, Cody Kankel, Siyuan Zhang, Scott S. Howard, Cody J. Smith (2019). Generating intravital super-resolution movies with conventional microscopy reveals actin dynamics that construct pioneer axons. Development, vol. 146, no. 5, pp. dev171512.

PDF Code Video DOI Featured News 1 Featured News 2

Yide Zhang, Ian H. Guldner, Evan L. Nichols, David Benirschke, Cody J. Smith, Siyuan Zhang, Scott S. Howard (2019). Three-dimensional deep tissue multiphoton frequency-domain fluorescence lifetime imaging microscopy via phase multiplexing and adaptive optics. SPIE Photonics West 2019, San Francisco, California USA.

PDF DOI JenLab Young Investigator Award Video 1 Video 2 Featured News

Yide Zhang, David Benirschke, Ola Abdalsalam, Scott S. Howard (2018). Generalized stepwise optical saturation enables super-resolution fluorescence lifetime imaging microscopy. Biomedical Optics Express, vol. 9, no. 9, pp. 4077-4093.

PDF DOI

Yide Zhang, Prakash D. Nallathamby, Genevieve D. Vigil, Aamir A. Khan, Devon E. Mason, Joel D. Boerckel, Ryan K. Roeder, Scott S. Howard (2018). Super-resolution fluorescence microscopy by stepwise optical saturation. Biomedical Optics Express, vol. 9, no. 4, pp. 1613-1629.

PDF Code DOI NDIIF Award for Best Biological Imaging Publication 2018 Featured News

Genevieve Vigil, Yide Zhang, Aamir Khan, Scott Howard (2017). Description of deep saturated excitation multiphoton microscopy for super-resolution imaging. Journal of the Optical Society of America A, vol. 34, no. 7, pp. 1217-1223.

PDF DOI

Aamir A. Khan, Genevieve D. Vigil, Yide Zhang, Susan K. Fullerton-Shirey, Scott S. Howard (2017). Silica-coated ruthenium-complex nanoprobes for two-photon oxygen microscopy in biological media. Optical Materials Express, vol. 7, no. 3, pp. 1066-1076.

PDF DOI

Yide Zhang, Genevieve D. Vigil, Lina Cao, Aamir A. Khan, David Benirschke, Tahsin Ahmed, Patrick Fay, Scott S. Howard (2017). Saturation-compensated measurements for fluorescence lifetime imaging microscopy. Optics Letters, vol. 42, no. 1, pp. 155-158.

PDF Code DOI

Yide Zhang, Aamir A. Khan, Genevieve D. Vigil, Scott S. Howard (2016). Super-sensitivity multiphoton frequency-domain fluorescence lifetime imaging microscopy. Optics Express, vol. 24, no. 18, pp. 20862-20867.

PDF DOI

Yide Zhang, Aamir A. Khan, Genevieve D. Vigil, Scott S. Howard (2016). Investigation of signal-to-noise ratio in frequency-domain multiphoton fluorescence lifetime imaging microscopy. Journal of the Optical Society of America A, vol. 33, no. 7, pp. B1-B11.

PDF Code DOI

Shiping Wen, Zhigang Zeng, Tingwen Huang, Yide Zhang (2014). Exponential adaptive lag synchronization of memristive neural networks via fuzzy method and applications in pseudo random number generators. IEEE Transactions on Fuzzy Systems, vol. 22, no. 6, pp. 1704-1713.

PDF DOI